Package: childsds 0.8.0

childsds: Data and Methods Around Reference Values in Pediatrics

Calculation of standard deviation scores and percentiles adduced from different standards (WHO, UK, Germany, Italy, China, etc). Also, references for laboratory values in children and adults are available, e.g., serum lipids, iron-related blood parameters, IGF, liver enzymes. See package documentation for full list.

Authors:Mandy Vogel [aut, cre]

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childsds.pdf |childsds.html
childsds/json (API)
NEWS

# Install 'childsds' in R:
install.packages('childsds', repos = c('https://mvogel78.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • aga_15.ref - Parameters from recommendations of the German Adiposity Association
  • belgium.ref - Parameters derived from Flandern population
  • bone.ref - Parameters for different bone parameters
  • bp_wuehl_age.ref - Parameters from Wuehl et al. blood pressure reference values Germany according to age, from version 0.7.3 unplausible values are replaced by interpolated ones. For the original values check out earlier versions
  • bp_wuehl_height.ref - Parameters from Wuehl et al. blood pressure reference values Germany according to height from version 0.7.3 unplausible values are replaced by interpolated ones. For the original values check out earlier versions
  • cdc.ref - LMS Parameters for the Centers for Disease Control and Prevention 2000 Growth Charts, contains bmi, height, head cirumference, weight, weight for length,
  • cn.ref - Parameters for height of normal weight and obese children from the CrescNet database dependent on height
  • colombia_sf.ref - Parameters of skinfold measures derived from Colombian population
  • doyon_age.ref - Parameters for different carotid artery intima-media thickness and distensibility dependent on age
  • doyon_height.ref - Parameters for different carotid artery intima-media thickness and distensibility dependent on height
  • duran_bf.ref - Parameters for bodyfat ( for Whites, Blacks, and Mexican-Americans
  • ethiop.ref - Parameters derived Ethiopian children
  • fredriks05.ref - Parameters derived from Dutch children
  • international_lab.ref - International Laboratory Parameters Tables
  • iron.ref - Parameters for iron-related blood parameters in children
  • italian.ref - Parameters derived from Italian children
  • japan_lab.ref - Parameters of serum insulin-like growth factor-I
  • japanese.ref - Parameters derived from Japanese children
  • kawel_boehm.ref - Parameters for Cardiovascular Magnetic Resonance
  • kiggs.ref - LMS Parameters for German reference data (KiGGS, 2003-2006) for height, weight, bmi, hip, whr, whtr, bodyfat, skinfold sum, triceps skinfold, subscapular skinfold, and waist circumference
  • kiggs_bp.ref - Parameters derived from the German KiGGS cohort
  • kro.ref - LMS Parameters for German reference data
  • life_circ.ref - Parameters for different circumferences and whr and whtr
  • life_cysc.ref - Parameters for different metabolom parameters from the LIFE Child cohort
  • life_fibroscan.ref - Parameters for fibroscan from the LIFE Child cohort
  • life_heart.ref - Hs-Troponin T and NT-proBNP from the LIFE Child cohort
  • life_igf.ref - IGF-I and IGF-BP3 from the LIFE Child cohort
  • life_liver.ref - Parameters for serum liver enzymes
  • life_skinfold.ref - Parameters for different skinfolds
  • life_thyr.ref - Parameters for TSH, FT3, FT4 from the LIFE Child cohort
  • lipids.ref - Parameters for serum lipids in children
  • metabolom.ref - Parameters for different metabolom parameters from the LIFE Child cohort
  • momo.ref - Parameters for the German MoMo study
  • motor.ref - Parameters for 5 subtests of the KiGGS Motorik Module
  • nl3.ref - Parameters of skinfold measures derived from Colombian population
  • nl4.ref - Parameters derived from the 4th Dutch growth study
  • portug.ref - Parameters derived from Portuguese children
  • preterm.ref - Parameters Preterm and Intrauterine
  • saudi.ref - Parameters derived from Saudi children
  • turkish.ref - Parameters derived from Turkish children
  • uk1990.ref - Parameters from the 1990 UK growth study
  • ukwho.ref - LMS Parameters for UK-WHO growth charts for height, weight, bmi, head circumference
  • us.ref - Parameters derived from US children
  • who.ref - LMS Parameters for UK-WHO growth charts for height, weight, bmi, head circumference,arm mid upper arm circumference, subscapular and triceps skinfold, weight for height
  • who2007.ref - Parameters of skinfold measures derived from Colombian population
  • zong13.ref - Parameters derived from Chinese children

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

14 exports 1.00 score 36 dependencies 3 mentions 45 scripts 620 downloads

Last updated 3 years agofrom:84799b3f48. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 14 2024
R-4.5-winNOTESep 14 2024
R-4.5-linuxNOTESep 14 2024
R-4.4-winNOTESep 14 2024
R-4.4-macNOTESep 14 2024
R-4.3-winNOTESep 14 2024
R-4.3-macNOTESep 14 2024

Exports:aggregate_lmscalc_confintsdo_iterationsmake_percentile_tabmock_dfmock_valuesone_iterationprepare_datasdssds_2dselect_famsselect_measshowwormplot_gg

Dependencies:bootclassclicpp11dplyrfansigamlssgamlss.datagamlss.distgenericsgluelatticelifecyclemagrittrMASSMatrixnlmepillarpkgconfigplyrpurrrpurrrlyrR6Rcppreshape2rlangstringistringrsurvivaltibbletidyrtidyselectutf8vctrsVGAMwithr

Readme and manuals

Help Manual

Help pageTopics
Parameters from recommendations of the German Adiposity Association (2015, AGA)aga_15.ref
aggregate lms parametersaggregate_lms
Parameters derived from Flandern populationbelgium.ref
Parameters for different bone parametersbone.ref
Parameters from Wuehl et al. blood pressure reference values Germany according to age, from version 0.7.3 unplausible values are replaced by interpolated ones. For the original values check out earlier versionsbp_wuehl_age.ref
Parameters from Wuehl et al. blood pressure reference values Germany according to height from version 0.7.3 unplausible values are replaced by interpolated ones. For the original values check out earlier versionsbp_wuehl_height.ref
Calculate confidence intervalscalc_confints
LMS Parameters for the Centers for Disease Control and Prevention 2000 Growth Charts, contains bmi, height, head cirumference, weight, weight for length,cdc.ref
Parameters for height of normal weight and obese children from the CrescNet database dependent on heightcn.ref
Parameters of skinfold measures derived from Colombian populationcolombia_sf.ref
do lms iterationsdo_iterations
Parameters for different carotid artery intima-media thickness and distensibility dependent on agedoyon_age.ref
Parameters for different carotid artery intima-media thickness and distensibility dependent on heightdoyon_height.ref
Parameters for bodyfat ( for Whites, Blacks, and Mexican-Americansduran_bf.ref
Parameters derived Ethiopian childrenethiop.ref
fit lmsfit_gamlss
fit_gamlss1fit_gamlss1
fit lms parameters via VGAMfit_vgam
Parameters derived from Dutch children (additional to nl4.ref)fredriks05.ref
International Laboratory Parameters Tablesinternational_lab.ref
Parameters for iron-related blood parameters in childreniron.ref
Parameters derived from Italian childrenitalian.ref
Parameters of serum insulin-like growth factor-I (IGF-I)japan_lab.ref
Parameters derived from Japanese childrenjapanese.ref
Parameters for Cardiovascular Magnetic Resonancekawel_boehm.ref
Parameters derived from the German KiGGS cohortkiggs_bp.ref
LMS Parameters for German reference data (KiGGS, 2003-2006) for height, weight, bmi, hip, whr, whtr, bodyfat, skinfold sum, triceps skinfold, subscapular skinfold, and waist circumferencekiggs.ref
LMS Parameters for German reference data (Kromeyer Hauschild, 2001) for height, weight, bmi, and waist circumference, including preterm correction (Voigt)kro.ref
Parameters for different circumferences and whr and whtrlife_circ.ref
Parameters for different metabolom parameters from the LIFE Child cohortlife_cysc.ref
Parameters for fibroscan from the LIFE Child cohortlife_fibroscan.ref
hs-Troponin T and NT-proBNP from the LIFE Child cohortlife_heart.ref
IGF-I and IGF-BP3 from the LIFE Child cohortlife_igf.ref
Parameters for serum liver enzymeslife_liver.ref
Parameters for different skinfoldslife_skinfold.ref
Parameters for TSH, FT3, FT4 from the LIFE Child cohortlife_thyr.ref
Parameters for serum lipids in childrenlipids.ref
calculate raw valuesmake_percentile_tab
Parameters for different metabolom parameters from the LIFE Child cohortmetabolom.ref
Mock a data framemock_df
Mock Valuemock_value
Mock Valuesmock_values
Parameters for the German MoMo study (sports test)momo.ref
Parameters for 5 subtests of the KiGGS Motorik Modulemotor.ref
Parameters of skinfold measures derived from Colombian populationnl3.ref
Parameters derived from the 4th Dutch growth studynl4.ref
one iterationone_iteration
Table of referencesParTab-class
Parameters derived from Portuguese childrenportug.ref
prepare data for iteration processprepare_data
Parameters Preterm and Intrauterinepreterm.ref
Class of referencesRefGroup-class
Parameters derived from Saudi childrensaudi.ref
Calculate SDS Valuessds
Calculate SDS Values for 2-dimensional matrix of covariatessds_2d
Calculate SDS Valuessdsold
select familiesselect_fams
choose one measurement per subjectselect_meas
class ParTabshow,ParTab-method
class RefGroupshow,RefGroup-method
Parameters derived from Turkish childrenturkish.ref
Parameters from the 1990 UK growth studyuk1990.ref
LMS Parameters for UK-WHO growth charts for height, weight, bmi, head circumferenceukwho.ref
Parameters derived from US children (additional to the cdc.ref)us.ref
LMS Parameters for UK-WHO growth charts for height, weight, bmi, head circumference,arm mid upper arm circumference, subscapular and triceps skinfold, weight for heightwho.ref
Parameters of skinfold measures derived from Colombian populationwho2007.ref
Worm Plot ggplot versionwormplot_gg
Parameters derived from Chinese children (additional to nl4.ref)zong13.ref