Package: childsds 0.9.11

childsds: Data and Methods Around Reference Values in Pediatrics

Calculation of standard deviation scores and percentiles adduced from different standards (WHO, UK, Germany, Italy, China, etc). Also, references for laboratory values in children and adults are available, e.g., serum lipids, iron-related blood parameters, IGF, liver enzymes. See package documentation for full list.

Authors:Mandy Vogel [aut, cre]

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childsds.pdf |childsds.html✨
childsds/json (API)
NEWS

# Install 'childsds' in R:
install.packages('childsds', repos = c('https://mvogel78.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • aga_15.ref - Parameters from recommendations of the German Adiposity Association
  • belgium.ref - Parameters derived from Flandern population
  • bone.ref - Parameters for different bone parameters
  • bp_wuehl_age.ref - Parameters from Wuehl et al. blood pressure reference values Germany according to age, from version 0.7.3 unplausible values are replaced by interpolated ones. For the original values check out earlier versions
  • bp_wuehl_height.ref - Parameters from Wuehl et al. blood pressure reference values Germany according to height from version 0.7.3 unplausible values are replaced by interpolated ones. For the original values check out earlier versions
  • cdc.ref - LMS Parameters for the Centers for Disease Control and Prevention 2000 Growth Charts, contains bmi, height, head cirumference, weight, weight for length,
  • cn.ref - Parameters for height of normal weight and obese children from the CrescNet database dependent on height
  • cole_lobstein.ref - Parameters for bmi from Cole and Lobstein, 2012
  • colombia_sf.ref - Parameters of skinfold measures derived from Colombian population
  • doyon_age.ref - Parameters for different carotid artery intima-media thickness and distensibility dependent on age
  • doyon_height.ref - Parameters for different carotid artery intima-media thickness and distensibility dependent on height
  • duran_bf.ref - Parameters for bodyfat ( for Whites, Blacks, and Mexican-Americans
  • ethiop.ref - Parameters derived Ethiopian children
  • fredriks05.ref - Parameters derived from Dutch children
  • ghouili_anthro.ref - Parameters for height, weight, sitting height, etc from Ghouili, 2021
  • gomez_bmitmi.ref - Parameters for BMI and TMI from Gomez, 2021
  • international_lab.ref - International Laboratory Parameters Tables
  • iron.ref - Parameters for iron-related blood parameters in children
  • italian.ref - Parameters derived from Italian children
  • japan_lab.ref - Parameters of serum insulin-like growth factor-I
  • japanese.ref - Parameters derived from Japanese children
  • kawel_boehm.ref - Parameters for Cardiovascular Magnetic Resonance
  • kiggs.ref - LMS Parameters for German reference data (KiGGS, 2003-2006) for height, weight, bmi, hip, whr, whtr, bodyfat, skinfold sum, triceps skinfold, subscapular skinfold, and waist circumference
  • kiggs_bp.ref - Parameters derived from the German KiGGS cohort
  • kiggs_lightness.ref - Parameters regarding lightness and height-to-mass ratio
  • kirk_bf.ref - Parameters for fat and lean mass from Kirk, 2021
  • kro.ref - LMS Parameters for German reference data (Kromeyer Hauschild, 2001) for height, weight, bmi, and waist circumference, including preterm correction (Voigt) and census data for ages 18+ to 92 years
  • kro.ref15 - LMS Parameters for German reference data (Kromeyer Hauschild, 2015) for height, weight, bmi, and waist circumference, including preterm correction (Voigt) and Kromyer-Hausschild 2015
  • leptin.ref - Parameters for leptin dependent on age/puberty and bmi
  • liao_igf1.ref - Parameters for IGF-1 from Liao, 2016
  • life_ap.ref - Parameters for alkaline phosphatase
  • life_cbc.ref - Parameters for complete blood count
  • life_circ.ref - Parameters for different circumferences and whr and whtr
  • life_ck.ref - Parameters for creatine kinase
  • life_cysc.ref - Parameters for different metabolom parameters from the LIFE Child cohort
  • life_fibroscan.ref - Parameters for fibroscan from the LIFE Child cohort
  • life_folb12.ref - Parameters regarding folate and cobalamine
  • life_hba1c.ref - Parameters for hba1c based on a child cohort a) including overweight and b) excluding overweight children
  • life_heart.ref - Hs-Troponin T and NT-proBNP from the LIFE Child cohort
  • life_igf.ref - IGF-I and IGF-BP3 from the LIFE Child cohort
  • life_liver.ref - Parameters for serum liver enzymes
  • life_oxyandrogene.ref - Parameters for oxyandrogenes
  • life_shbg.ref - Parameters for shbg and testosterone-shbg-ratio
  • life_skinfold.ref - Parameters for different skinfolds
  • life_steroide.ref - Parameters for steroid hormones
  • life_stfr.ref - Parameters regarding soluble transferrin receptor
  • life_thyr.ref - Parameters for TSH, FT3, FT4 from the LIFE Child cohort
  • life_vegf.ref - Parameters for vegf-d
  • life_vit.ref - Parameters for cobalamin and folate
  • linden_heart.ref - Parameters for left artrial volumne Linden et al,
  • lipids.ref - Parameters for serum lipids in children
  • metabolom.ref - Parameters for different metabolom parameters from the LIFE Child cohort
  • momo.ref - Parameters for the German MoMo study
  • motor.ref - Parameters for 5 subtests of the KiGGS Motorik Module
  • nl3.ref - Parameters of skinfold measures derived from Colombian population
  • nl4.ref - Parameters derived from the 4th Dutch growth study
  • ofenheimer_bf.ref - Parameters for fat and lean mass from Ofenheimer et al., 2020
  • portug.ref - Parameters derived from Portuguese children
  • preterm.ref - Parameters Preterm and Intrauterine
  • ripka_bf.ref - Parameters for fat and lean mass from Ripka et al, 2020
  • saudi.ref - Parameters derived from Saudi children
  • schafmeyer_leg.ref - Parameters for bone mineral content/density, fm, lm (lower limbs) from Schafmeyer, 2022
  • turkish.ref - Parameters derived from Turkish children
  • uchu.pal - UCHU colour scales
  • uk1990.ref - Parameters from the 1990 UK growth study
  • ukwho.ref - LMS Parameters for UK-WHO growth charts for height, weight, bmi, head circumference
  • us.ref - Parameters derived from US children
  • valencia_nc.ref - Parameters for neck circumference from Valencia-Sosa, 2021
  • who.ref - LMS Parameters for WHO growth charts for height, weight, bmi, head circumference,arm mid upper arm circumference, subscapular and triceps skinfold, weight for height
  • who2007.ref - Parameters of bmi, height, and weight; WHO 2007
  • zong13.ref - Parameters derived from Chinese children

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.49 score 51 scripts 738 downloads 3 mentions 30 exports 85 dependencies

Last updated 7 days agofrom:1be6bd4af1. Checks:1 OK, 8 WARNING. Indexed: yes.

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Exports:adjust_colorsaggregate_lmscalc_confintscalc_percent_excessdo_iterationsmake_percentile_tabmake_percentile_tab2dmean_riditsmid.mean.ranksmock_dfmock_valuesone_iterationprepare_datapropsprs_palridits.from.ranksscale_colour_prsscale_colour_uchuscale_fill_prsscale_fill_uchusdssds_2dsds_pubsds_pub2dsds2dselect_famsselect_measshowwormplot_ggwormplot2d_gg

Dependencies:askpassbitbit64bootcellrangerclassclicliprcolorspacecpp11crayoncurldata.tabledeldirDescToolsdplyre1071Exactexpmfansifarverforcatsgamlssgamlss.datagamlss.distgenericsggplot2gldgluegtablehavenhmshttrinterpisobandjsonlitelabelinglatticelifecyclelmomlubridatemagrittrMASSMatrixmgcvmimemunsellmvtnormnlmeopensslpillarpkgconfigplyrprettyunitsprogressproxypurrrpurrrlyrR6RColorBrewerRcppRcppEigenreadrreadxlrematchreshape2rlangrootSolverstudioapiscalesstringistringrsurvivalsystibbletidyrtidyselecttimechangetzdbutf8vctrsVGAMviridisLitevroomwithr

Leptin SDS

Rendered fromleptinsds.Rmdusingknitr::rmarkdownon Mar 26 2025.

Last update: 2025-03-26
Started: 2025-03-26

Readme and manuals

Help Manual

Help pageTopics
change saturation and brightness of given colorsadjust_colors
Parameters from recommendations of the German Adiposity Association (2015, AGA)aga_15.ref
aggregate lms parametersaggregate_lms
Parameters derived from Flandern populationbelgium.ref
Parameters for different bone parametersbone.ref
Parameters from Wuehl et al. blood pressure reference values Germany according to age, from version 0.7.3 unplausible values are replaced by interpolated ones. For the original values check out earlier versionsbp_wuehl_age.ref
Parameters from Wuehl et al. blood pressure reference values Germany according to height from version 0.7.3 unplausible values are replaced by interpolated ones. For the original values check out earlier versionsbp_wuehl_height.ref
Calculate confidence intervalscalc_confints
Calculate percentage relative to a given base percentilecalc_percent_excess
LMS Parameters for the Centers for Disease Control and Prevention 2000 Growth Charts, contains bmi, height, head cirumference, weight, weight for length,cdc.ref
Parameters for height of normal weight and obese children from the CrescNet database dependent on heightcn.ref
Parameters for bmi from Cole and Lobstein, 2012cole_lobstein.ref
Parameters of skinfold measures derived from Colombian populationcolombia_sf.ref
do lms iterationsdo_iterations
Parameters for different carotid artery intima-media thickness and distensibility dependent on agedoyon_age.ref
Parameters for different carotid artery intima-media thickness and distensibility dependent on heightdoyon_height.ref
dummydummy.refs
Parameters for bodyfat ( for Whites, Blacks, and Mexican-Americansduran_bf.ref
Parameters derived Ethiopian childrenethiop.ref
fit lmsfit_gamlss
fit_gamlss_2dfit_gamlss_2d
fit_gamlss1fit_gamlss1
fit lms parameters via VGAMfit_vgam
Parameters derived from Dutch children (additional to nl4.ref)fredriks05.ref
Parameters for height, weight, sitting height, etc from Ghouili, 2021ghouili_anthro.ref
Parameters for BMI and TMI from Gomez, 2021gomez_bmitmi.ref
International Laboratory Parameters Tablesinternational_lab.ref
Parameters for iron-related blood parameters in childreniron.ref
Parameters derived from Italian childrenitalian.ref
Parameters of serum insulin-like growth factor-I (IGF-I)japan_lab.ref
Parameters derived from Japanese childrenjapanese.ref
Parameters for Cardiovascular Magnetic Resonancekawel_boehm.ref
Parameters derived from the German KiGGS cohortkiggs_bp.ref
Parameters regarding lightness and height-to-mass ratiokiggs_lightness.ref
LMS Parameters for German reference data (KiGGS, 2003-2006) for height, weight, bmi, hip, whr, whtr, bodyfat, skinfold sum, triceps skinfold, subscapular skinfold, and waist circumferencekiggs.ref
Parameters for fat and lean mass from Kirk, 2021kirk_bf.ref
LMS Parameters for German reference data (Kromeyer Hauschild, 2001) for height, weight, bmi, and waist circumference, including preterm correction (Voigt) and census data for ages 18+ to 92 yearskro.ref
LMS Parameters for German reference data (Kromeyer Hauschild, 2015) for height, weight, bmi, and waist circumference, including preterm correction (Voigt) and Kromyer-Hausschild 2015kro.ref15
Parameters for leptin dependent on age/puberty and bmileptin.ref
Parameters for IGF-1 from Liao, 2016liao_igf1.ref
Parameters for alkaline phosphataselife_ap.ref
Parameters for complete blood countlife_cbc.ref
Parameters for different circumferences and whr and whtrlife_circ.ref
Parameters for creatine kinaselife_ck.ref
Parameters for different metabolom parameters from the LIFE Child cohortlife_cysc.ref
Parameters for fibroscan from the LIFE Child cohortlife_fibroscan.ref
Parameters regarding folate and cobalaminelife_folb12.ref
Parameters for hba1c based on a child cohort a) including overweight and b) excluding overweight childrenlife_hba1c.ref
hs-Troponin T and NT-proBNP from the LIFE Child cohortlife_heart.ref
IGF-I and IGF-BP3 from the LIFE Child cohortlife_igf.ref
Parameters for serum liver enzymeslife_liver.ref
Parameters for oxyandrogeneslife_oxyandrogene.ref
Parameters for shbg and testosterone-shbg-ratiolife_shbg.ref
Parameters for different skinfoldslife_skinfold.ref
Parameters for steroid hormoneslife_steroide.ref
Parameters regarding soluble transferrin receptorlife_stfr.ref
Parameters for TSH, FT3, FT4 from the LIFE Child cohortlife_thyr.ref
Parameters for vegf-dlife_vegf.ref
Parameters for cobalamin and folate (awkward)life_vit.ref
Parameters for left artrial volumne Linden et al,linden_heart.ref
Parameters for serum lipids in childrenlipids.ref
calculate raw valuesmake_percentile_tab
calculate raw valuesmake_percentile_tab2d
mean ridits for vectors of paired observationsmean_ridits
Parameters for different metabolom parameters from the LIFE Child cohortmetabolom.ref
calculate mid mean ranksmid.mean.ranks
Mock a data framemock_df
Mock Valuemock_value
Mock Valuesmock_values
Parameters for the German MoMo study (sports test)momo.ref
Parameters for 5 subtests of the KiGGS Motorik Modulemotor.ref
Parameters of skinfold measures derived from Colombian populationnl3.ref
Parameters derived from the 4th Dutch growth studynl4.ref
Parameters for fat and lean mass from Ofenheimer et al., 2020ofenheimer_bf.ref
one iterationone_iteration
Table of referencesParTab-class
Parameters derived from Portuguese childrenportug.ref
prepare data for iteration processprepare_data
Parameters Preterm and Intrauterinepreterm.ref
propabilitiesprops
color palette Pediatric researchprs_pal
Class of referencesRefGroup-class
ridits from ranksridits.from.ranks
Parameters for fat and lean mass from Ripka et al, 2020ripka_bf.ref
Parameters derived from Saudi childrensaudi.ref
discrete ggplot colour scale of PRS colorsscale_colour_prs
discrete ggplot colour scale of PRS colorsscale_fill_prs
uchu colour scalescale_colour_uchu scale_fill_uchu scale_uchu
Parameters for bone mineral content/density, fm, lm (lower limbs) from Schafmeyer, 2022schafmeyer_leg.ref
Calculate SDS Valuessds
Calculate SDS Values for 2-dimensional matrix of covariatessds_2d
Calculate SDS Valuessds_pub
Calculate SDS Valuessds_pub2d
Calculate SDS Values for 2-dimensional matrix of covariatessds2d
Calculate SDS Valuessdsold
select familiesselect_fams
choose one measurement per subjectselect_meas
class ParTabshow,ParTab-method
class RefGroupshow,RefGroup-method
Parameters derived from Turkish childrenturkish.ref
UCHU colour scalesuchu.pal
Parameters from the 1990 UK growth studyuk1990.ref
LMS Parameters for UK-WHO growth charts for height, weight, bmi, head circumferenceukwho.ref
Parameters derived from US children (additional to the cdc.ref)us.ref
Parameters for neck circumference from Valencia-Sosa, 2021valencia_nc.ref
LMS Parameters for WHO growth charts for height, weight, bmi, head circumference,arm mid upper arm circumference, subscapular and triceps skinfold, weight for heightwho.ref
Parameters of bmi, height, and weight; WHO 2007who2007.ref
Worm Plot ggplot versionwormplot_gg
Worm Plot ggplot versionwormplot2d_gg
Parameters derived from Chinese children (additional to nl4.ref)zong13.ref